Publications

Articles

• Caver Web 2.0: analysis of tunnels and ligand transport in dynamic ensembles of proteins

  MARQUES Sérgio Manuel BORKO Simeon VÁVRA Ondřej DVORSKÝ Jan KOHOUT Petr KABOUREK Petr HEJTMÁNEK Lukáš DAMBORSKÝ Jiří BEDNÁŘ David

  Article in Periodical

  Nucleic acids research, year: 2025, volume: 53, edition: May 2025, DOI

• Estimating resource budgets to ensure autotuning efficiency

  OĽHA Jaroslav HOZZOVÁ Jana ANTOL Matej FILIPOVIČ Jiří

  Article in Periodical

  PARALLEL COMPUTING, year: 2025, volume: 123, edition: March, DOI

• GOLEM: A tool for visualizing the distribution of Gene regulatOry eLEMents within the plant promoters with a focus on male gametophyte

  NEVOSÁD Lukáš KLODOVÁ Božena RUDOLF Jiří RAČEK Tomáš PŘEROVSKÁ Tereza KUSOVÁ Alžbeta SVOBODOVÁ Radka HONYS David PROCHÁZKOVÁ SCHRUMPFOVÁ Petra

  Article in Periodical

  Plant Journal, year: 2025, volume: 121, edition: 5, DOI

• Inhaled Lead Nanoparticles Enter the Brain through the Olfactory Pathway and Induce Neurodegenerative Changes Resembling Tauopathies

  JEDLIČKOVÁ Adriena KRISTEKOVÁ Daniela HUSÁKOVÁ Zuzana COUFALÍK Pavel VRLÍKOVÁ Lucie SMUTNÁ Tereza CAPANDOVÁ Michaela ALEXA Lukáš LUSKOVÁ Denisa KŘŮMAL Kamil JAKEŠOVÁ Veronika VEČEŘA Zbyněk ZEZULA Nikodém KANICKÝ Viktor HAMPL Aleš VACULOVIČ Tomáš MIKUŠKA Pavel DUMKOVÁ Jana BUCHTOVÁ Marcela

  Article in Periodical

  ACS Nano, year: 2025, volume: 19, edition: 13, DOI

• Integration, Cataloguing and Management of Biobanking and Clinical Data Using FAIR Genomes Metadata Schema

  KACOVÁ Radoslava HOUFEK Tomáš HORKÝ Ondřej TOMÁŠIK Radovan KURÁŇ Jan RŮŽIČKA Michal HRSTKA Roman NOVÁČEK Vít DUDOVÁ Zdenka

  Article in Periodical

  Data Intelligence, year: 2025, volume: 2025, edition: 1, DOI

• Joint-Dataset Learning and Cross-Consistent Regularization for Text-to-Motion Retrieval

  MESSINA Nicola SEDMIDUBSKÝ Jan FALCHI Fabrizio REBOK Tomáš

  Article in Periodical

  ACM Transactions on Multimedia Computing, Communications, and Applications, year: 2025, DOI

• Lessons learned from European health data projects with cancer use cases: implementation of health standards and internet of things semantic interoperability

  GYRARD Amelie ABEDIAN Somayeh GRIBBON Philip MANIAS George RICK van Nuland ZATLOUKAL Kurt NICOLAE Irina Emilia DANCIU Gabriel NECHIFOR Septimiu MARTI-BONMATI Luis MALLOL Pedro DALMIANI Stefano AUTEXIER Serge JENDROSSEK Mario AVRAMIDIS Ioannis EVA Garcia Alvarez HOLUB Petr BLANQUER Ignacio BODEN Anna HUSSEIN Rada

  Article in Periodical

  Journal of Medical Internet Research, year: 2025, volume: 27, DOI

• On Collaboration and Automation in the Context of Threat Detection and Response with Privacy-Preserving Features

  NITZ Lasse GURABI MEHDI Akbari ČERMÁK Milan ŽÁDNÍK Martin KARPUK David DRICHEL Arthur SCHÄFER Sebastian HOLMES Benedikt

  Article in Periodical

  Digital Threats: Research and Practice, year: 2025, volume: 6, edition: 1, DOI

• PDBCharges: Quantum-Mechanical Partial Atomic Charges for PDB Structures

  SCHINDLER Ondřej SVOBODA Tomáš ROŠINEC Adrián RAČEK Tomáš BUČEKOVÁ Gabriela TICHÝ Dominik BERKA Karel SVOBODOVÁ Radka

  Article in Periodical

  Nucleic acids research, year: 2025, DOI

• Severity-Based Triage of Cybersecurity Incidents Using Kill Chain Attack Graphs

  SADLEK Lukáš YAMIN Muhammad Mudassar ČELEDA Pavel KATT Basel

  Article in Periodical

  Journal of Information Security and Applications, year: 2025, volume: 89, edition: March 2025, DOI