Publications

A comprehensive European Colorectal Cancer Cohort dataset

HOLUB Petr TÖRNWALL Outi ALVAREZ Eva Garcia PROYNOVA Rumyana STAMPE Florian MAQSOOD Saher ATAIAN Maxmilian SCHLÜNDER Irene CARPÉN Olli MEIJER Gerrit NENUTIL Rudolf VALÍK Dalibor PARODI Barbara HIEMSTRA Annemieke BIERKENS Mariska CASTANOS-VÉLEZ Esmeralda ÜCKERT Frank ALEXANDRE Diogo VOJTÍŠEK Ondřej ANNA-LIISA Bader SIMELL Birgit AHERN Caitlin HORVAT Vitomir STEINFELDER Erik GNOCCHI Matteo MOSCATELLI Marco FÜRBAß Alexander HORÁK Jiří FREXIA Francesca MASCIA Cecilia SULIS Alessandro DELUSSU Giovanni DEL RIO Mauro MELONI Vittorio PIREDDU Luca LEO Simone PIRAS Marco Enrico KAČENGA Martin GOFFLOT Stéphanie MATE Sebastian PROKOSCH Hans-Ulrich ROMANO Paolo PISTILLO Daniela HOFFMEISTER Michael BROBEIL Alexander KUGIC Amila HUPPERTZ Berthold PALEARI Valentina MÜLLER Heimo REIHS Robert GEMOLL Timo BANTEL Yannick SJÖBLOM Tobias KYRIACOU Kyriacos MARTINO Simona di CILIBERTO Gennaro KOCK-SCHOPPENHAUER Ann-Kristin OBERLÄNDER Martina HABERMANN Jens K HUSMANN Gabriele PER-HENRIK D Edqvist ZLOBEC Inti BERGER Martin D BOECKMANN Lars GEORGE Fabienne SOUTHERINGTON Tom BRUCKER Daniel P FAUGERAS Laurence VELLA Joanna FELICE Alex PACE Malcolm FALLERINI Chiara RENIERI Alessandra HADJISAVVAS Andreas SARGSYAN Karine LOIZIDOU Maria A BESSE-HAMMER Tatiana VOGL Franziska LITTON Jan-Eric HUMMEL Michael ZATLOUKAL Kurt LAVITRANO Marialuisa

Peer-reviewed scientific article

SCIENTIFIC DATA, year: 2026, DOI

AlphaFind v2: similarity search in AlphaFold DB and TED domains across structural contexts

SLANINÁKOVÁ Terézia ROŠINEC Adrián ČILLÍK Jakub KŘENEK Aleš GREŠOVÁ Katarína PORUBSKÁ Jana MARŠÁLKOVÁ Eva OĽHA Jaroslav PROCHÁZKA David HEJTMÁNEK Lukáš DOHNAL Vlastislav BERKA Karel SVOBODOVÁ Radka ANTOL Matej

Peer-reviewed scientific article

NUCLEIC ACIDS RESEARCH, year: 2026, DOI

Analysis of cyclohexane, cyclopentane, and benzene conformations in ligands for PDB X-ray structures using the Hill-Reilly approach

BUČEKOVÁ Gabriela DOSHCHENKO Viktoriia SVOBODA Tomáš PORUBSKÁ Jana CHARESHNEU Aliaksei RAČEK Tomáš HORSKÝ Vladimír SVOBODOVÁ Radka SCHINDLER Ondřej

Peer-reviewed scientific article

Journal of Cheminformatics, year: 2026, volume: 18, edition: 1, DOI

Atomic Charge Calculator III: a modern platform for calculating partial atomic charges

RAČEK Tomáš PILÁT Martin SCHINDLER Ondřej BUČEKOVÁ Gabriela TICHÝ Dominik BERKA Karel SVOBODOVÁ Radka

Peer-reviewed scientific article

Nucleic Acids Research, year: 2026, DOI

Automatic tuning based on hardware performance counters and machine learning

GEVORGYAN Suren Harutyunyan CESAR Eduardo SIKORA Anna FILIPOVIČ Jiří ALCARAZ Jordi

Peer-reviewed scientific article

FUTURE GENERATION COMPUTER SYSTEMS-THE INTERNATIONAL JOURNAL OF ESCIENCE, year: 2026, volume: 179, edition: June, DOI

bio.tools: an expanded web service for research software in the life sciences

MENDES Ana I S IENASESCU Hans ANDERSEN Christian A T CALHOUN Erin CHMURA Piotr J COLLIER Keiler GOGA Iosif GUSTAFSSON Ove J R KALAŠ Matúš KIERKEGAARD Mads NIELSEN Niclas K JAANISO Erik JENSEN Jennifer R B LUDL Adriaan-Alexander MÉNAGER Hervé PALMBLAD Magnus MAGYAR Zsófia RAČEK Tomáš ROŠINEC Adrián RUSZ Filip STEEGHS-TURCHINA Mariia SZMIGIEL Aleksandra SVOBODOVÁ Radka SCHWÄMMLE Veit

Peer-reviewed scientific article

Nucleic Acids Research, year: 2026, DOI

Comparative analysis of OSINT tools, techniques, and legal aspects

LAZAROV Willi MORAVEC Vojtěch LOUTOCKÝ Pavel VOSTOUPAL Jakub MARTINÁSEK Zdeněk

Peer-reviewed scientific article

Computers & Security, year: 2026, volume: 2026, edition: 168, DOI

From slides to AI-ready maps: Standardized multi-layer tissue maps as metadata for artificial intelligence in digital pathology

FIALA Gernot PLASS Markus HARB Robert REGITNIG Peter SKOK Kristijan ZOUGHBI Wael Al ZERNER Carmen TORKE Paul KARGL Michaela MÜLLER Heimo BRÁZDIL Tomáš GALLO Matej KUBÍN Jaroslav STOKLASA Roman NENUTIL Rudolf ZERBE Norman HOLZINGER Andreas HOLUB Petr

Peer-reviewed scientific article

Artificial Intelligence in Medicine, year: 2026, volume: 174, DOI

Challenges of autonomous weapon systems for international criminal law: from Czechia with mixed feelings

HARAŠTA Jakub KASL František VOSTOUPAL Jakub

Peer-reviewed scientific article

e-Revue Internationale de Droit Pénal, year: 2026, volume: 2026, edition: A-03

MolViewStories: Interactive molecular storytelling

SLANINÁKOVÁ Terézia CHARLOP-POWERS Zachary DOSHCHENKO Viktoriia ROSE Alexander S. MIDLIK Adam SEKULA Anna FONSECA Neli MORRIS Kyle L. BURLEY Stephen K. VELANKAR Sameer FLEMING Jennifer VALLAT Brinda AUTIN Ludovic SEHNAL David

Peer-reviewed scientific article

PROTEIN SCIENCE, year: 2026, volume: 35, edition: 4, DOI

Articles