3DZD: Protein structural embeddings of ESM Atlas

Novotná,  Lucie; Slanináková,  Terézia; Procházka,  David; Hejtmánek,  Lukáš; Rošinec,  Adrián; Oľha,  Jaroslav; Grešová,  Katarína; Dohnal,  Vlastislav; Antol,  Matej

3DZD: Protein structural embeddings of ESM Atlas

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This publication doesn't include Institute of Computer Science. It includes Faculty of Informatics. Official publication website can be found on muni.cz.

Authors	NOVOTNÁ Lucie SLANINÁKOVÁ Terézia PROCHÁZKA David HEJTMÁNEK Lukáš ROŠINEC Adrián OĽHA Jaroslav GREŠOVÁ Katarína DOHNAL Vlastislav ANTOL Matej
Year of publication	2024
Type	Research and development projects
MU Faculty or unit	Faculty of Informatics
Citation
Description	The dataset contains proteins from AlphaFold DB v4 (https://alphafold.ebi.ac.uk/) encoded into one-dimensional vectors (embeddings). The embeddings encode proteins by their tertiary structure. Additional information is available at our GitHub (https://github.com/Coda-Research-Group/ProteinEmbeddingBenchmark).
Related projects:	ELIXIR-CZ: Czech National Infrastructure for Biological Data Learned Indexing for Similarity Searching Using artificial intelligence techniques for data processing, complex analysis and visualization of large-scale data Nástroj na automatickou anotaci a prohledávání velkých sad proteinů na základě podobnosti jejich struktur