Mgr. Adrián Rošinec

2026

• AlphaFind v2: similarity search in AlphaFold DB and TED domains across structural contexts

  SLANINÁKOVÁ Terézia ROŠINEC Adrián ČILLÍK Jakub KŘENEK Aleš GREŠOVÁ Katarína PORUBSKÁ Jana MARŠÁLKOVÁ Eva OĽHA Jaroslav PROCHÁZKA David HEJTMÁNEK Lukáš DOHNAL Vlastislav BERKA Karel SVOBODOVÁ Radka ANTOL Matej

  Peer-reviewed scientific article

  NUCLEIC ACIDS RESEARCH, year: 2026, DOI

• AlphaFind v2: Similarity Search in AlphaFold DB and TED Domains across Structural Contexts - data

  SLANINÁKOVÁ Terézia ROŠINEC Adrián ČILLÍK Jakub KŘENEK Aleš GREŠOVÁ Katarína PORUBSKÁ Jana MARŠÁLKOVÁ Eva OĽHA Jaroslav PROCHÁZKA David HEJTMÁNEK Lukáš DOHNAL Vlastislav BERKA Karel SVOBODOVÁ Radka ANTOL Matej

  Specialized public database

  Year: 2026, type: Specialized public database

• bio.tools: an expanded web service for research software in the life sciences

  MENDES Ana I S IENASESCU Hans ANDERSEN Christian A T CALHOUN Erin CHMURA Piotr J COLLIER Keiler GOGA Iosif GUSTAFSSON Ove J R KALAŠ Matúš KIERKEGAARD Mads NIELSEN Niclas K JAANISO Erik JENSEN Jennifer R B LUDL Adriaan-Alexander MÉNAGER Hervé PALMBLAD Magnus MAGYAR Zsófia RAČEK Tomáš ROŠINEC Adrián RUSZ Filip STEEGHS-TURCHINA Mariia SZMIGIEL Aleksandra SVOBODOVÁ Radka SCHWÄMMLE Veit

  Peer-reviewed scientific article

  Nucleic Acids Research, year: 2026, DOI

• GROMACS MetaDump: A tool to describe molecular dynamics simulations with powerful metadata

  SLANINÁKOVÁ Terézia ROŠINEC Adrián PAVLÍK Tomáš RANDIAK Róbert SVOBODA Tomáš RAČEK Tomáš BUČEKOVÁ Gabriela SCHINDLER Ondřej ANTOL Matej KŘENEK Aleš BERKA Karel SVOBODOVÁ Radka

  Conference abstract

  Year: 2026, type: Conference abstract

• GROMACS MetaDump: Automatic FAIR-Ready Metadata Extraction for Molecular Dynamics Simulations

  ROŠINEC Adrián ČILLÍK Jakub SLANINÁKOVÁ Terézia PAVLÍK Tomáš RANDIAK Róbert SVOBODA Tomáš RAČEK Tomáš BUČEKOVÁ Gabriela SCHINDLER Ondřej ANTOL Matej KŘENEK Aleš BERKA Karel SVOBODOVÁ Radka

  Appeared in Conference without Proceedings

  Year: 2026, type: Appeared in Conference without Proceedings

• MDDash – one stop shop for MD simulations

  KRÁSA Filip ROŠINEC Adrián ONDREJKA Adam KŘENEK Aleš

  Conference abstract

  Year: 2026, type: Conference abstract

• MDFind: Federated search for molecular dynamics data

  ROŠINEC Adrián PAVLÍK Tomáš SLANINÁKOVÁ Terézia KŘENEK Aleš ANTOL Matej SVOBODOVÁ Radka

  Conference abstract

  Year: 2026, type: Conference abstract

2025

• AlphaFind 2.0 – Enhanced structural similarity search for AlphaFold database

  SLANINÁKOVÁ Terézia ČILLÍK Jakub ROŠINEC Adrián GREŠOVÁ Katarína KŘENEK Aleš PORUBSKÁ Jana SVOBODOVÁ Radka ANTOL Matej

  Appeared in Conference without Proceedings

  Year: 2025, type: Appeared in Conference without Proceedings

• GROMACS MetaDump

  ROŠINEC Adrián SLANINÁKOVÁ Terézia PAVLÍK Tomáš RANDIAK Róbert SVOBODA Tomáš RAČEK Tomáš BUČEKOVÁ Gabriela SCHINDLER Ondřej ANTOL Matej KŘENEK Aleš BERKA Karel SVOBODOVÁ Radka

  Software

  Year: 2025

• Gromacs MetaDump: a tool for extracting GROMACS simulation metadata

  ROŠINEC Adrián SLANINÁKOVÁ Terézia PAVLÍK Tomáš RANDIAK Róbert SVOBODA Tomáš RAČEK Tomáš BUČEKOVÁ Gabriela SCHINDLER Ondřej ANTOL Matej KŘENEK Aleš BERKA Karel SVOBODOVÁ Radka

  Peer-reviewed scientific article

  Journal of Cheminformatics, year: 2025, volume: 17, edition: 1, DOI