RNDr. Matej Antol, Ph.D.

2025

• Advancing research by unlocking the full value of scientific data

  CAPANDOVÁ Michaela JURÁČEK Jaroslav AMBROZOVÁ Veronika ANTOL Matej

  Conference abstract

  Year: 2025, type: Conference abstract

• Estimating resource budgets to ensure autotuning efficiency

  OĽHA Jaroslav HOZZOVÁ Jana ANTOL Matej FILIPOVIČ Jiří

  Article in Periodical

  PARALLEL COMPUTING, year: 2025, volume: 123, edition: March, DOI

• On the Costs and Benefits of Learned Indexing for Dynamic High-Dimensional Data: Extended Version

  SLANINÁKOVÁ Terézia OĽHA Jaroslav PROCHÁZKA David ANTOL Matej DOHNAL Vlastislav

  Research report

  Year: 2025

• Refining Structure-Based Search in AlphaFold DB: Including confidence metrics into AlphaFind

  SLANINÁKOVÁ Terézia MARŠÁLKOVÁ Eva GREŠOVÁ Katarína KŘENEK Aleš OĽHA Jaroslav PAVLÍK Tomáš ŠPRINGEROVÁ Pavlína SEHNAL David ANTOL Matej

  Conference abstract

  Year: 2025, type: Conference abstract

• Scaling Learned Metric Index to 100M Datasets

  PROCHÁZKA David SLANINÁKOVÁ Terézia ČERŇANSKÝ Jozef OĽHA Jaroslav ANTOL Matej DOHNAL Vlastislav

  Article in Proceedings

  SIMILARITY SEARCH AND APPLICATIONS, SISAP 2024, year: 2025

• Using Polycaprolactone Nanofibers for the Proof-of-Concept Construction of the Alveolar-Capillary Interface

  CAPANDOVÁ Michaela SEDLÁKOVÁ Veronika VORÁČ Zbyněk KOTASOVÁ Hana DUMKOVÁ Jana MORÁŇ Lukáš JAROŠ Josef ANTOL Matej BOHAČIAKOVÁ Dáša HAMPL Aleš

  Article in Periodical

  JOURNAL OF BIOMEDICAL MATERIALS RESEARCH PART A, year: 2025, volume: 113, edition: 1, DOI

2024

• 3D-af-Surfer: Protein structural embeddings of AlphaFold DB

  NOVOTNÁ Lucie SLANINÁKOVÁ Terézia PROCHÁZKA David HEJTMÁNEK Lukáš ROŠINEC Adrián OĽHA Jaroslav GREŠOVÁ Katarína DOHNAL Vlastislav ANTOL Matej

  Specialized database

  Year: 2024, type: Specialized database

• 3DZD: Protein structural embeddings of AlphaFold DB v4

  NOVOTNÁ Lucie SLANINÁKOVÁ Terézia PROCHÁZKA David HEJTMÁNEK Lukáš ROŠINEC Adrián OĽHA Jaroslav GREŠOVÁ Katarína DOHNAL Vlastislav ANTOL Matej

  Specialized database

  Year: 2024, type: Specialized database

• 3DZD: Protein structural embeddings of ESM Atlas

  NOVOTNÁ Lucie SLANINÁKOVÁ Terézia PROCHÁZKA David HEJTMÁNEK Lukáš ROŠINEC Adrián OĽHA Jaroslav GREŠOVÁ Katarína DOHNAL Vlastislav ANTOL Matej

  Research and development projects

  Year: 2024, type: Research and development projects

• AlphaFind — discover structure similarity across the proteome in AlphaFold DB

  GREŠOVÁ Katarína ŠPRINGEROVÁ Pavlína SLANINÁKOVÁ Terézia PROCHÁZKA David OĽHA Jaroslav ROŠINEC Adrián JÁNOŠOVÁ Miriama ČILLÍK Jakub PORUBSKÁ Jana SVOBODOVÁ Radka DOHNAL Vlastislav ANTOL Matej

  Conference abstract

  Year: 2024, type: Conference abstract