Long-residency hydration, cation binding and dynamics of Loop E/Helix IV rRNA - L25 protein complex

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Authors	RÉBLOVÁ Kamila SPACKOVÁ Nadezda KOČA Jaroslav LEONTIS Neocles SPONER Jiri
Year of publication	2004
Type	Article in Periodical
Magazine / Source	Biophysical Journal
MU Faculty or unit	Faculty of Science
Citation
Field	Biophysics
Keywords	molecular dynamics simulations; Loop E motifs; non-Watson-Crick base pairs; ordered hydration; 5S rRNA.
Description	Internal loops are common elements of RNA secondary structure. They often form binding sites for metals, proteins and other RNAs. To under-stand the effects of internal loops on RNA structure and function, we have carried out molecular dynamics simulations of 5S rRNA Loop E-Helix IV/protein L25.
Related projects:	Biomolecular Center