CoverView: clear atom-level visualization of electron density coverage of PDB structures to assist validation

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This publication doesn't include Institute of Computer Science. It includes Central European Institute of Technology. Official publication website can be found on muni.cz.

Authors

CHARESHNEU Aliaksei SEHNAL David SVOBODOVÁ Radka

Year of publication 2022
MU Faculty or unit

Central European Institute of Technology

Description A prototype of a web server allowing the users to clearly visualize the electron density coverage of a protein structure at the level of atoms. Consists of a sortable table with relevant information (title, assembly weight, total atoms, fraction of atoms covered, resolution high, R factor, R free) on a set of selected structures linked to pre-created Mol* sessions, where each structure is colored according to the electron density coverage of atoms (green – covered, red – not covered). The implementation is based on a Python library called gemmi.

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