doc. RNDr. Petr Holub, Ph.D.

2024

• Toward a common standard for data and specimen provenance in life sciences

  WITTNER Rudolf HOLUB Petr MASCIA Cecilia FREXIA Francesca MÜLLER Heimo PLASS Markus ALLOCCA Clare BETSOU Fay BURDETT Tony CANCIO Ibon CHAPMAN Adriane CHAPMAN Martin COURTOT Mélanie CURCIN Vasa EDER Johann ELLIOT Mark EXTER Katrina GOBLE Carole GOLEBIEWSKI Martin KISLER Bron KREMER Andreas LEO Simone LIN-GIBSON Sheng MARSANO Anna MATTAVELLI Marco MOORE Josh NAKAE Hiroki PERSEIL Isabelle SALMAN Ayat SLUKA James SOILAND-REYES Stian STRAMBIO-DE-CASTILLIA Caterina SUSSMAN Michael SWEDLOW Jason R ZATLOUKAL Kurt GEIGER Jörg

  Article in Periodical

  LEARNING HEALTH SYSTEMS, year: 2024, volume: 8, edition: 1, DOI

2023

• "Be Sustainable Recommendations" for FAIR Resources in Life Sciences research: EOSC-Life's Lessons

  DAVID Romain RYBINA Arina BUREL Jean-Marie HERICHE Jean-Karim AUDERGON Pauline BOITEN Jan-Willem COPPENS Frederik CROCKETT Sara KATRINA Exter FAHRENER Sven FRATELLI Maddalena GOBLE Carole GORMANNS Philipp GRANTNER Tobias GRUNING Bjorn GURWITZ Kim Tamara HANCOCK John HARMSE Henriette HOLUB Petr JUTY Nick KARNBACH Geoffrey KAROUNE Emma KEPPLER Antje KLEMEIER Jessica LANCELOTTI Carla LEGRAS Jean-Luc LISTER L Allyson DARIO Livio Longo LUDWIG Rebecca MADON Benedicte MASSIMI Marzia MATSER Vera MATTEONI Rafaele MAYRHOFER Michaela Th CHRISTIAN Ohmann PANAGIOTOPOULOU Maria PARKINSON Helen PERSEIL Isabelle PFANDER Claudia PIERUSCHKA Roland RAESS Michael RAUBER Andreas RICHARD Audrey S ROMANO Paolo ROSATO Antonio SANCHEZ-PLA Alex SANSONE Susanna-Assunta SARKANS Ugis SERRANO-SOLANO Beatriz TANG Jing TANOLI Ziaurrehman TEDDS Jonathan WAGENER Harald WEISE Martin WESTERHOFF Hans V WITTNER Rudolf EWBANK Jonathan BLOMBERG Niklas GRIBBON Philip

  Article in Periodical

  EMBO Journal, year: 2023

• AI for Life: Trends in Artificial Intelligence for Biotechnology

  HOLZINGER Andreas KEIBLINGER Katharina HOLUB Petr ZATLOUKAL Kurt MÜLLER Heimo

  Article in Periodical

  NEW BIOTECHNOLOGY, year: 2023, volume: 74, edition: 1, DOI

• BIBBOX, a FAIR toolbox and App Store for Life Science Research

  MÜLLER Heimo LOPES-DIAS Catarina HOLUB Petr PLASS Markus JUNGWIRTH Emilian REIHS Robert TORKE Paul R MALATRAS Apostolos BERGER Anouk COOMBS Heather DILLNER Joakim MERINO-MARTINEZ Roxana

  Article in Periodical

  NEW BIOTECHNOLOGY, year: 2023, volume: 77, DOI

• Privacy risks of whole-slide image sharing in digital pathology

  HOLUB Petr MÜLLER Heimo BÍL Tomáš PIREDDU Luca PLASS Markus PRASSER Fabian SCHLÜNDER Irene ZATLOUKAL Kurt NENUTIL Rudolf BRÁZDIL Tomáš

  Article in Periodical

  Nature Communications, year: 2023, volume: 14, edition: 2577, DOI

• Provenance of specimen and data – A prerequisite for AI development in computational pathology

  PLASS Markus WITTNER Rudolf HOLUB Petr FREXIA Francesca MASCIA Cecilia GALLO Matej MÜLLER Heimo GEIGER Jörg

  Article in Periodical

  NEW BIOTECHNOLOGY, year: 2023, volume: 78, edition: DEC, DOI

• Shedding light on the black box of a neural network used to detect prostate cancer in whole slide images by occlusion-based explainability

  GALLO Matej KRAJŇANSKÝ Vojtěch NENUTIL Rudolf HOLUB Petr BRÁZDIL Tomáš

  Article in Periodical

  NEW BIOTECHNOLOGY, year: 2023, volume: 78, edition: December, DOI

• Umbrella Data Management Plans to Integrate FAIR Data: Lessons From the ISIDORe and BY-COVID Consortia for Pandemic Preparedness

  DAVID Romain RICHARD Audrey CONNELLAN Claire LAUER Katharina CHIUSANO Maria Luisa GOBLE Carole HOUDE Martin KEMMER Isabel KEPPLER Antje LIEUTAUD Philippe OHMANN Christian PANAGIOTOPOULOU Maria KHAN Sara Raza RYBINA Arina SOILAND-REYES Stian WIT Charlotte WITTNER Rudolf BUONO Rafael Andrade MARSH Sarah Arnaud AUDERGON Pauline BONFILS Dylan JOSE-MARIA Carazo CHARREL Remi COPPENS Frederik FECKE Wolfgang FILIPPONE Claudia ALVAREZ Eva Garcia GUL Sheraz HERMJAKOB Henning HERZOG Katja HOLUB Petr KOZERA Lukasz LISTER Allyson LÓPEZ-CORONADO José MADON Bénédicte MAJCEN Kurt MARTIN William MÜLLER Wolfgang PAPADOPOULOU Elli PRAT Christine M.A. ROMANO Paolo SUSANNA-ASSUNTA Sansone SAUNDERS Gary BLOMBERG Niklas EWBANK Jonathan

  Article in Periodical

  Data Science Journal, year: 2023, DOI

• xOpat: eXplainable Open Pathology Analysis Tool

  HORÁK Jiří FURMANOVÁ Katarína KOZLÍKOVÁ Barbora BRÁZDIL Tomáš HOLUB Petr KAČENGA Martin GALLO Matej NENUTIL Rudolf BYŠKA Jan RUSŇÁK Vít

  Article in Periodical

  COMPUTER GRAPHICS FORUM, year: 2023, volume: 42, edition: 3, DOI

2022

• Automated annotations of epithelial cells and stroma in hematoxylin–eosin-stained whole-slide images using cytokeratin re-staining

  BRÁZDIL Tomáš GALLO Matej NENUTIL Rudolf KUBANDA Andrej TOUFAR Martin HOLUB Petr

  Article in Periodical

  The Journal of Pathology: Clinical Research, year: 2022, volume: 8, edition: 2, DOI